Behavior of Proteins under Pressure from Experimental Pressure-Dependent Structures

نویسندگان

چکیده

Structure-based models are coarse-grained representations of the interactions responsible for protein folding process. In their simplest form, they use only native contact map a given to predict main features its process by computer simulation. Given limitations, these frequently complemented with sequence-dependent contributions or additional information. Specifically, analyze effect pressure on folding/unfolding transition, special forms interaction potentials employed, which may priori determine outcome simulations. this work, we have tried keep original simplicity structure-based models. Therefore, used folded structures that been experimentally determined at different pressures define maps and thus dependent pressure. Despite apparently tiny structural differences induced pressure, our simulation results provide thermodynamic kinetic behaviors, roughly correspond experimental observations (when there is possible comparison) two proteins as benchmarks, hen egg-white lysozyme dihydrofolate reductase. work shows feasibility using global effects physical property

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Exotic behavior and crystal structures of calcium under pressure.

Experimental studies established that calcium undergoes several counterintuitive transitions under pressure: fcc --> bcc --> simple cubic --> Ca-IV --> Ca-V, and becomes a good superconductor in the simple cubic and higher-pressure phases. Here, using ab initio evolutionary simulations, we explore the behavior of Ca under pressure and find a number of new phases. Our structural sequence differs...

متن کامل

Proteins under pressure.

T oday, 3D models of proteins are often constructed entirely by a computer. Building old-fashioned wire models may have been time-consuming, but it was not drudgery. To the contrary, it was a labor of love. One could not fail to marvel at the way in which the successive amino acids fitted together, with all the interactions making physical sense. However, the packing was not perfect. Here and t...

متن کامل

Novel Hydrogen Hydrate Structures under Pressure

Gas hydrates are systems of prime importance. In particular, hydrogen hydrates are potential materials of icy satellites and comets, and may be used for hydrogen storage. We explore the H₂O-H₂ system at pressures in the range 0-100 GPa with ab initio variable-composition evolutionary simulations. According to our calculation and previous experiments, the H₂O-H₂ system undergoes a series of tran...

متن کامل

Determination of Central Venous Pressure from Intraocular Pressure

Background: In many clinical situations, knowledge of central venous pressure (CVP) is important.  Measurement of CVP is not always possible. Objective: To determine if intraocular pressure (IOP) can be used as an estimate for CVP. Methods: IOP and CVP were measured concurrently in 30 candidates of coronary artery bypass graft surgery.  Those with carotid artery or jugular venous diseases as we...

متن کامل

Evaluation of the diurnal intraocular pressure fluctuations and blood pressure under dehydration due to fasting

Introduction: This study aimed to investigate the diurnal intraocular pressure fluctuations under dehydration conditions and the relationship between the intraocular pressure fluctuations and blood pressure. Methods: The intraocular pressures (IOP), body weights, as well as systolic and diastolic blood pressures (SBP, DBP) of 36 fasting healthy volunteers were recorded at 8:00 a.m. and 5:00 p.m...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Journal of Physical Chemistry B

سال: 2021

ISSN: ['1520-6106', '1520-5207']

DOI: https://doi.org/10.1021/acs.jpcb.1c03313